Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

GenomicsDB on azure #8438

Merged
merged 1 commit into from
Dec 9, 2023

Allow GenomicsDBImport to connect to az:// files without interference

de45517
Select commit
Loading
Failed to load commit list.
Merged

GenomicsDB on azure #8438

Allow GenomicsDBImport to connect to az:// files without interference
de45517
Select commit
Loading
Failed to load commit list.
Codecov / codecov/patch succeeded Dec 8, 2023 in 1s

64.706% of diff hit (target 86.401%)

View this Pull Request on Codecov

64.706% of diff hit (target 86.401%)

Annotations

Check warning on line 579 in src/main/java/org/broadinstitute/hellbender/tools/genomicsdb/GenomicsDBImport.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/genomicsdb/GenomicsDBImport.java#L578-L579 

Added lines #L578 - L579 were not covered by tests

Check warning on line 587 in src/main/java/org/broadinstitute/hellbender/tools/genomicsdb/GenomicsDBImport.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/genomicsdb/GenomicsDBImport.java#L585-L587 

Added lines #L585 - L587 were not covered by tests

Check warning on line 607 in src/main/java/org/broadinstitute/hellbender/tools/genomicsdb/GenomicsDBImport.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/genomicsdb/GenomicsDBImport.java#L607 

Added line #L607 was not covered by tests

Check warning on line 622 in src/main/java/org/broadinstitute/hellbender/tools/genomicsdb/GenomicsDBImport.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/genomicsdb/GenomicsDBImport.java#L622 

Added line #L622 was not covered by tests

Check warning on line 433 in src/test/java/org/broadinstitute/hellbender/tools/genomicsdb/GenomicsDBImportIntegrationTest.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/test/java/org/broadinstitute/hellbender/tools/genomicsdb/GenomicsDBImportIntegrationTest.java#L433 

Added line #L433 was not covered by tests

Check warning on line 439 in src/test/java/org/broadinstitute/hellbender/tools/genomicsdb/GenomicsDBImportIntegrationTest.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/test/java/org/broadinstitute/hellbender/tools/genomicsdb/GenomicsDBImportIntegrationTest.java#L435-L439 

Added lines #L435 - L439 were not covered by tests

Check warning on line 452 in src/test/java/org/broadinstitute/hellbender/tools/genomicsdb/GenomicsDBImportIntegrationTest.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/test/java/org/broadinstitute/hellbender/tools/genomicsdb/GenomicsDBImportIntegrationTest.java#L441-L452 

Added lines #L441 - L452 were not covered by tests

Check warning on line 1505 in src/test/java/org/broadinstitute/hellbender/tools/genomicsdb/GenomicsDBImportIntegrationTest.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/test/java/org/broadinstitute/hellbender/tools/genomicsdb/GenomicsDBImportIntegrationTest.java#L1505 

Added line #L1505 was not covered by tests

Check warning on line 131 in src/test/java/org/broadinstitute/hellbender/tools/spark/PileupSparkIntegrationTest.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/test/java/org/broadinstitute/hellbender/tools/spark/PileupSparkIntegrationTest.java#L131 

Added line #L131 was not covered by tests
View more details on Codecov