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refactoring some stuff for clarity #8598

Merged
merged 4 commits into from
Dec 7, 2023

unfix minor thing in RampedHaplotypeCallerEngine

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Merged

refactoring some stuff for clarity #8598

unfix minor thing in RampedHaplotypeCallerEngine
fdca109
Select commit
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Codecov / codecov/patch succeeded Dec 6, 2023 in 0s

73.404% of diff hit (target 49.746%)

View this Pull Request on Codecov

73.404% of diff hit (target 49.746%)

Annotations

Check warning on line 48 in src/main/java/org/broadinstitute/hellbender/tools/walkers/GenotypeGVCFsEngine.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/GenotypeGVCFsEngine.java#L48 

Added line #L48 was not covered by tests

Check warning on line 306 in src/main/java/org/broadinstitute/hellbender/tools/walkers/GenotypeGVCFsEngine.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/GenotypeGVCFsEngine.java#L306 

Added line #L306 was not covered by tests

Check warning on line 93 in src/main/java/org/broadinstitute/hellbender/tools/walkers/genotyper/MinimalGenotypingEngine.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/genotyper/MinimalGenotypingEngine.java#L93 

Added line #L93 was not covered by tests

Check warning on line 229 in src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerEngine.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerEngine.java#L229 

Added line #L229 was not covered by tests

Check warning on line 338 in src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerEngine.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerEngine.java#L338 

Added line #L338 was not covered by tests

Check warning on line 341 in src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerEngine.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerEngine.java#L340-L341 

Added lines #L340 - L341 were not covered by tests

Check warning on line 511 in src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerEngine.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerEngine.java#L511 

Added line #L511 was not covered by tests

Check warning on line 594 in src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerEngine.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerEngine.java#L594 

Added line #L594 was not covered by tests

Check warning on line 695 in src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerEngine.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerEngine.java#L695 

Added line #L695 was not covered by tests

Check warning on line 153 in src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerGenotypingEngine.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerGenotypingEngine.java#L153 

Added line #L153 was not covered by tests

Check warning on line 209 in src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerGenotypingEngine.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerGenotypingEngine.java#L209 

Added line #L209 was not covered by tests

Check warning on line 57 in src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/MultiPloidyGenotyperCache.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/MultiPloidyGenotyperCache.java#L57 

Added line #L57 was not covered by tests
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