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Update the GATK base image to a newer LTS ubuntu release #8610

Merged

droazen merged 13 commits into master from dr_update_docker_base_image

Dec 12, 2023

Merged

Incorporate Sam L patch to upgrade conda + pip

Codecov / codecov/patch succeeded Dec 11, 2023 in 0s

86.364% of diff hit (target 86.401%)

86.364% of diff hit (target 86.401%)

src/test/java/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/SystemCommandUtilsTest.java#L45-L46

Added lines #L45 - L46 were not covered by tests

src/test/java/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/SystemCommandUtilsTest.java#L57-L58

Added lines #L57 - L58 were not covered by tests

src/test/java/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/SystemCommandUtilsTest.java#L63-L64

Added lines #L63 - L64 were not covered by tests