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Update the GATK base image to a newer LTS ubuntu release #8610

Merged
merged 13 commits into from
Dec 12, 2023

Restore epsilon, switch to release base image, update scripts and docs

92ce8ac
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Merged

Update the GATK base image to a newer LTS ubuntu release #8610

Restore epsilon, switch to release base image, update scripts and docs
92ce8ac
Select commit
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Failed to load commit list.
Codecov / codecov/project succeeded Dec 12, 2023 in 0s

86.397% (-0.004%) compared to e2c5fab

View this Pull Request on Codecov

86.397% (-0.004%) compared to e2c5fab

Details

Codecov Report

Merging #8610 (92ce8ac) into master (e2c5fab) will decrease coverage by 0.004%.
Report is 5 commits behind head on master.
The diff coverage is 100.000%.

Additional details and impacted files
@@               Coverage Diff               @@
##              master     #8610       +/-   ##
===============================================
- Coverage     86.401%   86.397%   -0.004%     
- Complexity     39727     39815       +88     
===============================================
  Files           2364      2371        +7     
  Lines         186947    187375      +428     
  Branches       20464     20505       +41     
===============================================
+ Hits          161524    161887      +363     
- Misses         18219     18264       +45     
- Partials        7204      7224       +20     
Files Coverage Δ
...able/ExtractVariantAnnotationsIntegrationTest.java 98.305% <100.000%> (+0.091%) ⬆️
...alable/ScoreVariantAnnotationsIntegrationTest.java 97.143% <100.000%> (+0.128%) ⬆️
.../walkers/vqsr/scalable/SystemCommandUtilsTest.java 88.462% <100.000%> (+27.592%) ⬆️
...e/TrainVariantAnnotationsModelIntegrationTest.java 83.957% <100.000%> (+0.351%) ⬆️

... and 17 files with indirect coverage changes