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Make M2 haplotype and clustered events filters smarter about germline events #8717

Merged
merged 13 commits into from
Mar 25, 2024
Merged

Make M2 haplotype and clustered events filters smarter about germline events #8717

merged 13 commits into from
Mar 25, 2024

Commits on Mar 5, 2024

  1. M2 bad haplotype filter does not filter variants that share a haploty… 

    …pe with a germline event
    @davidbenjamin
    davidbenjamin committed Mar 5, 2024
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  2. some work towards improving the ECNT annotation

    @davidbenjamin
    davidbenjamin committed Mar 5, 2024
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  3. finished improving the ECNT annotation

    @davidbenjamin
    davidbenjamin committed Mar 5, 2024
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  4. fixed some things

    @davidbenjamin
    davidbenjamin committed Mar 5, 2024
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Commits on Mar 6, 2024

  1. some minor test fixes

    @davidbenjamin
    davidbenjamin committed Mar 6, 2024
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  2. non-assembled events edge case

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    davidbenjamin committed Mar 6, 2024
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Commits on Mar 7, 2024

  1. dealing with stupoid exact text match

    @davidbenjamin
    davidbenjamin committed Mar 7, 2024
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Commits on Mar 19, 2024

  1. review edits

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    davidbenjamin committed Mar 19, 2024
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  2. whoops

    @davidbenjamin
    davidbenjamin committed Mar 19, 2024
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Commits on Mar 20, 2024

  1. weak evidence contributes to bad haplotype filter

    @davidbenjamin
    davidbenjamin committed Mar 20, 2024
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  2. two ECNT annotations -- haplotype and region -- and clustered events … 

    …filter looks at both
    @davidbenjamin
    davidbenjamin committed Mar 20, 2024
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Commits on Mar 22, 2024

  1. commit

    @davidbenjamin
    davidbenjamin committed Mar 22, 2024
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Commits on Mar 25, 2024

  1. test

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    davidbenjamin committed Mar 25, 2024
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