Standardize test results directory between normal/docker tests

.github/workflows/gatk-tests.yml

@@ -230,10 +230,6 @@ jobs:
             bash --init-file /gatk/gatkenv.rc /root/run_unit_tests.sh;
           TEST_EXIT_VALUE=$?;
           $( exit ${TEST_EXIT_VALUE} );
-          sudo chmod -R a+w build/reports/;
-          mkdir build/reports/tests/test \
-           && cp -rp build/reports/tests/testOnPackagedReleaseJar/* build/reports/tests/test \
-           && rm -r build/reports/tests/testOnPackagedReleaseJar;
 
       - uses: ./.github/actions/upload-gatk-test-results
         if: always()

scripts/docker/dockertest.gradle

@@ -144,6 +144,9 @@ task testOnPackagedReleaseJar(type: Test){
 
     jvmArgs = getJVMArgs(runtimeAddOpens, testAddOpens)
 
+    //Set this to match the name of the normal test output in order to simplify finding / uploading it
+    reports.html.outputLocation = file("$buildDir/reports/tests/test")
+
     classpath = files( gatkJar, testDependencyJar, testClassesJar)
     testClassesDirs = files(testClassesUnpacked)
 }

src/test/java/org/broadinstitute/hellbender/tools/PrintReadsIntegrationTest.java

@@ -27,6 +27,12 @@ public void testFileToFileWithMD5(String fileIn, String extOut, String reference
         doFileToFile(fileIn, extOut, reference, true);
     }
 
+
+    @Test
+    public void failToTestReporting(){
+        Assert.fail();
+    }
+
     @Test
     public void testNoConflictPG() throws IOException {
         final File inFile = new File(TEST_DATA_DIR, "print_reads_withPG.sam");