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Update HTSJDK to 4.1.1 and Picard to 3.2.0 #8900

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Jun 29, 2024
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@droazen droazen commented Jun 28, 2024

Update HTSJDK to 4.1.1 and Picard to 3.2.0

Included a unit test to check for the presence of the fix in HTSJDK 4.1.1 for the CRAM base corruption bug reported in #8768

Resolves #8768

@droazen droazen requested a review from jamesemery June 28, 2024 19:11
Included a unit test to check for the presence of the fix in HTSJDK 4.1.1 for the
CRAM base corruption bug reported in #8768

Resolves #8768
@droazen droazen merged commit 64348bc into master Jun 29, 2024
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@droazen droazen deleted the dr_update_picard_to_3.2.0 branch June 29, 2024 21:00
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PrintReads introduces N bases when encoding some CRAMs and changes sequence
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