Update add_networks.Rmd #137
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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
on: | |
push: | |
branches: [main, master, dev_SeuratV5] | |
pull_request: | |
branches: [main, master, dev_SeuratV5] | |
release: | |
types: [published] | |
workflow_dispatch: | |
name: pkgdown | |
jobs: | |
pkgdown: | |
runs-on: ubuntu-latest | |
env: | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
steps: | |
- uses: actions/checkout@v2 | |
- uses: r-lib/actions/setup-pandoc@v2 | |
- uses: r-lib/actions/setup-r@v2 | |
with: | |
use-public-rspm: true | |
- uses: r-lib/actions/setup-r-dependencies@v2 | |
with: | |
extra-packages: any::pkgdown, any::reticulate, local::., any::devtools | |
needs: website | |
- uses: actions/setup-python@v2 | |
with: | |
python-version: '3.10' | |
- name: Setup hummuspy env | |
run: | | |
reticulate::conda_create("r-reticulate", packages="python") | |
reticulate::py_install("hummuspy", envname = "r-reticulate", pip=TRUE) | |
shell: Rscript {0} | |
- name: Build site | |
run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE) | |
shell: Rscript {0} | |
- name: Deploy to GitHub pages 🚀 | |
if: github.event_name != 'pull_request' | |
uses: JamesIves/[email protected] | |
with: | |
clean: false | |
branch: gh-pages | |
folder: docs |