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@cmc-aau

Center for Microbial Communities, Aalborg University, DK

A home for all things code for projects and science from the Center for Microbial Communities, Aalborg University

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  1. mfd_wiki mfd_wiki Public

    Wiki of the Microflora Danica project

    5

  2. mfd_metadata mfd_metadata Public

    Metadata cleaning and report making for the Microflora Danica project

    HTML 4 1

  3. MiSEQ_testbarcodes MiSEQ_testbarcodes Public

    Test an Illumina MiSEQ run for cross-talk and sample bleedover

    Shell 1 1

  4. nanopore_16Samp nanopore_16Samp Public

    Snakemake workflow to process 16S nanopore amplicon sequences (of any length) and produce an abundance table including taxonomy

    Python

  5. learn-git learn-git Public

    Practice using git(hub)

    4

  6. rstudio_server_setup rstudio_server_setup Public

    A guide on how to install RStudio Server on any Linux VM/machine

    Shell

Repositories

Showing 10 of 25 repositories
  • mfd_sr_mags Public

    Repository for phylogenetic overview of short-read MAGs from the Microflora Danica project

    cmc-aau/mfd_sr_mags’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated Sep 11, 2024
  • biocloud-docs Public

    Documentation website for our HPC cluster (and the likes)

    cmc-aau/biocloud-docs’s past year of commit activity
    0 Apache-2.0 1 0 0 Updated Sep 5, 2024
  • mfd_hab_class Public

    Repo for MFD Ontology habitat classification using microbial fingerprint

    cmc-aau/mfd_hab_class’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Sep 5, 2024
  • mfd_danish_vs_global_microbiome_section Public

    This is a repo for the Danish vs global microbiome section of the MFD paper

    cmc-aau/mfd_danish_vs_global_microbiome_section’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated Sep 5, 2024
  • mfd_overview Public

    General statistics and plots to summarize the MFD project

    cmc-aau/mfd_overview’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Sep 4, 2024
  • nanopore_16Samp Public

    Snakemake workflow to process 16S nanopore amplicon sequences (of any length) and produce an abundance table including taxonomy

    cmc-aau/nanopore_16Samp’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Aug 26, 2024
  • snakemake_project_template Public template

    Testing snakemake

    cmc-aau/snakemake_project_template’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 12, 2024
  • mfd_novelty_section Public

    This is a repo for the novelty section of the MFD paper 1.

    cmc-aau/mfd_novelty_section’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Aug 5, 2024
  • mfd_wiki Public

    Wiki of the Microflora Danica project

    cmc-aau/mfd_wiki’s past year of commit activity
    5 GPL-3.0 0 0 0 Updated Jul 31, 2024
  • ood-ansible Public Forked from OSC/ood-ansible

    An ansible role for Open Ondemand

    cmc-aau/ood-ansible’s past year of commit activity
    Jinja 0 MIT 30 0 0 Updated Mar 26, 2024
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