v1.5.0

Enhancements

#14

• --cluster-method gives an opportunity to use OTU clustering differently just with opticlust default value. Among other method, there are --cluster-method agc and --cluster-method dgc which implement Vsearch - an open-source alternative to usearch, so it should be way more efficient.

Updates

• conda environment file, not only containing Vsearch but also generated with conda v4.5.1

v1.4.1

Updates

#10

• README changes address the need for the description of new config-file-database-path-related features from v1.4.0

v1.4.0

Enhancements

#10

• mothulity.py handles default databases paths with config file.
• mothulity --set-align-database-path and mothulity.py --set-taxonomy-database-path should be used for that rather than editing the config file by hand.
• Default paths are set during installation.

Updates

• Code inside mothulity_dbaser.py is way cleaner.

Fixes

#8

• mothulity_dbaser.py downloads all databases in a row, skipping bad connections.

v1.3.0

ENH: Changed mothulity_dbaser CLI to take positional argument.

ENH: First unittests.

ENH: Setting databases paths in config file with mothulity CLI.

UPD: Code comments and restructuring.

v1.2.4

UPD

• README

v1.2.3

FIX

• removed shelve caching-related code

UPD

• depeding on system-wide mothur instalation if using MPI

v1.2.2

UPD

• Amended help ffor the resources argument.
• Added slurm tag.

FIX

• Removed slurm tag.

v1.1.0

Enhancements

• installation and update script.
• doctests.
• interactive rarefaction and nmds charts.
• automatic removal of too small groups before running an analysis.

Fixes

• slurm handling.
• many more...

Updates

• self-written mothur-krona file converter.
• renewed decision tree flow with verbosity for the input detection.

v1.0

The first release