Releases: dizak/mothulity
Releases · dizak/mothulity
v1.5.0
Enhancements
--cluster-method
gives an opportunity to use OTU clustering differently just with opticlust default value. Among other method, there are--cluster-method agc
and--cluster-method dgc
which implement Vsearch - an open-source alternative to usearch, so it should be way more efficient.
Updates
- conda environment file, not only containing Vsearch but also generated with conda v4.5.1
v1.4.1
v1.4.0
Enhancements
mothulity.py
handles default databases paths with config file.mothulity --set-align-database-path
andmothulity.py --set-taxonomy-database-path
should be used for that rather than editing the config file by hand.- Default paths are set during installation.
Updates
- Code inside
mothulity_dbaser.py
is way cleaner.
Fixes
mothulity_dbaser.py
downloads all databases in a row, skipping bad connections.
v1.3.0
v1.2.4
v1.2.3
v1.2.2
v1.1.0
Enhancements
- installation and update script.
- doctests.
- interactive rarefaction and nmds charts.
- automatic removal of too small groups before running an analysis.
Fixes
- slurm handling.
- many more...
Updates
- self-written mothur-krona file converter.
- renewed decision tree flow with verbosity for the input detection.