Dual graph

config/dualGL_sparse.json

@@ -0,0 +1,212 @@
+{
+  "benchmark_setup": {
+    "data": [
+       {
+        "data_id": "example1",
+        "graph_id": "random-1-ultra-sparse",
+        "parameters_id": "gwi",
+        "seed_range": [
+            1,
+            5
+        ]
+    },
+        {
+        "data_id": "example1",
+        "graph_id": "random-1-sparse",
+        "parameters_id": "gwi",
+        "seed_range": [
+            1,
+            5
+        ]
+    },
+      {
+        "data_id": "example1",
+        "graph_id": "lattice",
+        "parameters_id": "gwi",
+        "seed_range": [
+            1,
+            5
+        ]
+    },
+        {
+        "data_id": "example1",
+        "graph_id": "ar5",
+        "parameters_id": "gwi",
+        "seed_range": [
+            1,
+            5
+        ]
+    },
+        {
+        "data_id": "example1",
+        "graph_id": "circle",
+        "parameters_id": "gwi",
+        "seed_range": [
+            1,
+            5
+        ]
+    }
+    ],
+    "evaluation": {
+      "benchmarks": {
+        "filename_prefix": "dualGraph_p200_sparse/",
+        "show_seed": false,
+        "errorbar": true,
+        "errorbarh": false,
+        "scatter": true,
+        "path": true,
+        "text": false,
+          "ids": [
+              "dualGL-gt13",
+              "jtsampler_gts",
+              "psi-learn",
+              "glasso",
+              "mb"
+        ]
+      },
+        "graph_true_plots": true,
+        "graph_true_stats": false,
+        "ggally_ggpairs": false,
+        "graph_plots": [],
+        "mcmc_traj_plots": [
+            {
+            "id": "jtsampler_gts",
+            "burn_in": 0.0,
+            "thinning": 100,
+            "functional": [
+                "score"
+            ],
+            "active": true
+        }
+        ],
+        "mcmc_heatmaps": [],
+        "mcmc_autocorr_plots": []
+    }
+  },
+  "resources": {
+    "data": {
+      "iid": [
+        {
+          "id": "example1",
+          "standardized": false,
+          "n": [
+              20, 50, 100
+          ]
+        }
+      ]
+    },
+    "graph": {
+        "trilearn_rand_bandmat": [
+            {
+            "id": "ar5",
+            "max_bandwidth": 5,
+            "dim": 200
+        }
+        ],          
+        "bdgraph_graphsim": [
+          {
+          "id": "random-1-sparse",
+          "p": 200,
+          "graph": "random",
+          "class": null,
+          "size": null,
+          "prob": 0.1
+        },
+          {
+          "id": "random-1-ultra-sparse",
+          "p": 200,
+          "graph": "random",
+          "class": null,
+          "size": null,
+          "prob": 0.01
+        },
+          {
+          "id": "lattice",
+          "p": 200,
+          "graph": "lattice",
+          "class": null,
+          "size": null,
+          "prob": 0.1
+        },
+          {
+          "id": "circle",
+          "p": 200,
+          "graph": "circle",
+          "class": null,
+          "size": null,
+          "prob": 0.2
+        }
+      ]
+    },
+    "parameters": {
+      "bdgraph_rgwish": [
+        {
+          "id": "gwi",
+          "b": 3,
+          "threshold_conv": 0.000001
+        }
+      ]
+    },
+      "structure_learning_algorithms": {
+          "equsa_psilearner": [
+              {
+              "id": "psi-learn",
+              "timeout": null, 
+              "alpha1": 0.3,
+              "alpha2": [0.01, 0.025, 0.05, 0.1, 0.15, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.9, 0.98]
+
+          }], 
+          "dualgl": [
+              {
+              "id": "dualGL-gt13",
+              "timeout": null,
+              "startalg": "jtsampler_gts",
+               "alpha": [0.01, 0.025, 0.05, 0.1, 0.15, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.9, 0.99]
+           }
+           ],
+      "athomas_jtsampler": [
+          {
+          "id": "jtsampler_gts",                    
+          "burnin_frac": 0.5,
+          "mcmc_estimator": ["threshold"],
+          "timeout": null,
+          "mcmc_seed": 1,                    
+          "num_samples": 10000000,
+          "sampler": 1,
+          "edge_penalty": 0.0,
+          "size_maxclique": 100,
+          "full_output": true,
+          "threshold": [
+              0.0,
+              0.1,
+              0.2,
+              0.3,
+              0.4,
+              0.5,
+              0.6,
+              0.7,
+              0.8,
+              0.9,
+              1.0
+          ]
+      }
+      ],
+          "huge_glasso": [
+              {
+              "id": "glasso",
+              "lambda": [2, 1, 0.8, 0.6, 0.4, 0.2, 0.1, 0.05, 0.01],
+              "timeout": null
+          }
+          ],
+          "huge_mb": [
+              {
+              "id": "mb",
+              "lambda": [2, 1, 0.8, 0.6, 0.4, 0.2, 0.1, 0.05, 0.01],
+              "timeout": null
+          }
+          ]
+      }
+}
+}
+
+