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Center for Infectious Disease Control
- Utrecht, The Netherlands
- https://orcid.org/0000-0001-7788-0307
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RIVM-bioinformatics/AmpliGone
RIVM-bioinformatics/AmpliGone PublicA tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment
Python 9
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RIVM-bioinformatics/TrueConsense
RIVM-bioinformatics/TrueConsense PublicTrueConsense is a consensus caller for viral-targets that create biologically correct consensus sequences. TrueConsense keeps track of open reading frames, compensates for common sequencing or alig…
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RIVM-bioinformatics/ViroConstrictor
RIVM-bioinformatics/ViroConstrictor PublicViroConstrictor is a pipeline designed to process raw FastQ data from viral amplicon-based sequencing and generate biologically correct consensus sequences of the given viral genome
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RIVM-bioinformatics/SARS2seq
RIVM-bioinformatics/SARS2seq PublicSARS2seq is a pipeline designed to process raw FastQ data from targeted SARS-CoV-2 sequencing and generate biologically correct consensus sequences of the SARS-CoV-2 genome.
Python 6
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DennisSchmitz/Jovian_archive
DennisSchmitz/Jovian_archive PublicMetagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics a…
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