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feature: support single batch gtdbtk classification #130

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@franciscozorrilla franciscozorrilla commented Jun 9, 2023

🩻 Single batch submission of GTDBTk-based taxonomic classification 🚀

Current GTDBTk rule is great when dealing with many metagenomes, but when dealing with many isolate samples it makes more sense to follow this subworkflow task.

🐍 Snakefile tasks

  • create GTDBTk_singlerun for single job submission of small number of genomes

🔨 Additional modifications for full integration/support

  • metaGEM.sh: add options + support for new tasks, helpfile message
  • main readme: update helpfile message

# 🩻 Single batch submission of GTDBTk-based taxonomic classification 🚀

## 🐍 Snakefile tasks

- [x] create GTDBTk_singlerun for single job submission of small number of genomes

## 🔨 Additional modifications for full integration/support

- [ ] metaGEM.sh: add options + support for new tasks
- [ ] config.yaml: add params used in new tasks
- [ ] config readme file
- [ ] main readme file: text
@franciscozorrilla franciscozorrilla self-assigned this Jun 9, 2023
@franciscozorrilla franciscozorrilla added the enhancement New feature or request label Jun 9, 2023
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