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@gagneurlab

Gagneur lab

To understand the genetic basis of gene regulation and its implication in diseases.

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  1. drop drop Public

    Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

    Python 128 43

  2. OUTRIDER OUTRIDER Public

    OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data

    R 47 10

  3. MMSplice_MTSplice MMSplice_MTSplice Public

    Tissue-specific variant effect predictions on splicing

    Jupyter Notebook 38 21

  4. FRASER FRASER Public

    FRASER - Find RAre Splicing Events in RNA-seq

    R 36 20

  5. concise concise Public

    Concise: Keras extension for regulatory genomics

    Jupyter Notebook 32 13

  6. absplice absplice Public

    Python 32 4

Repositories

Showing 10 of 48 repositories
  • drop Public

    Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

    gagneurlab/drop’s past year of commit activity
    Python 128 MIT 43 42 4 Updated Aug 14, 2024
  • AbExp Public
    gagneurlab/AbExp’s past year of commit activity
    Python 1 MIT 1 0 1 Updated Aug 12, 2024
  • dependencies_DNALM Public

    Code repository for the manuscript: Nucleotide dependency analysis of DNA language models reveals genomic functional elements

    gagneurlab/dependencies_DNALM’s past year of commit activity
    Jupyter Notebook 4 0 0 0 Updated Aug 2, 2024
  • OUTRIDER Public

    OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data

    gagneurlab/OUTRIDER’s past year of commit activity
    R 47 MIT 10 13 1 Updated Jul 31, 2024
  • funcRVP Public

    Bayesian genotype to phenotype model leveraging gene embeddings

    gagneurlab/funcRVP’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jul 18, 2024
  • rep Public

    RNA expression prediction

    gagneurlab/rep’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jul 11, 2024
  • abexp-ukbb-trait-analysis Public

    UK Biobank trait analysis with AbExp scores

    gagneurlab/abexp-ukbb-trait-analysis’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jul 5, 2024
  • FRASER Public

    FRASER - Find RAre Splicing Events in RNA-seq

    gagneurlab/FRASER’s past year of commit activity
    R 36 MIT 20 28 0 Updated Jul 2, 2024
  • gagneurlab/Leukemia_outlier’s past year of commit activity
    R 2 0 0 0 Updated Jun 10, 2024
  • absplice Public
    gagneurlab/absplice’s past year of commit activity
    Python 32 4 5 2 Updated May 26, 2024

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