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Could not find read type: jaccard #78
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Hi @jialanm , |
Hi Ines,
Thank you for the reply! I am able to use FRASER2 if I install
using devtools::install_github('gagneurlab/FRASER', ref='1.99.0',
dependencies=TRUE). However, the bioconductor installation does not seem to
install the new version even though I specified the version number to be
1.99.0.
Best regards,
Jialan
…On Wed, Aug 23, 2023 at 9:08 AM Ines Scheller ***@***.***> wrote:
Hi @jialanm <https://github.com/jialanm> ,
sorry for the late reply, I didn't see the issue earlier.
Which FRASER version are you using? Make sure it is > 1.99.0 if you want
to use FRASER 2.0 / the Intron Jaccard Index metric.
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Hi there, Could you retry intalling FRASER through Bioconductor. Let us know if it still does not install 1.99.0 |
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Hi,
I tried to run
fds <- calculatePSIValues(fds, types="jaccard", BPPARAM=bpparam())
but keep getting the error:Error in FUN(X[[i]], ...) : Could not find read type: jaccard Calls: calculatePSIValues -> unique -> vapply -> FUN
fds
is created from:I wonder if you could help look into this. Thanks!
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