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setup.py
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setup.py
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#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""The setup script."""
from setuptools import setup, find_packages
with open('README.md') as readme_file:
readme = readme_file.read()
with open('HISTORY.rst') as history_file:
history = history_file.read()
requirements = [
'setuptools',
'kipoiseq',
'cyvcf2',
'tensorflow',
'scipy',
'pandas',
'pyfaidx',
'tqdm',
'click',
'cyvcf2<=0.30.15',
'pyranges>=0.0.71,<0.0.126',
]
setup_requirements = ['pytest-runner', ]
test_requirements = ['pytest', 'pytest-benchmark']
setup(
author="Jun Cheng, Muhammed Hasan Çelik",
author_email='[email protected], [email protected]',
classifiers=[
'Development Status :: 2 - Pre-Alpha',
'Intended Audience :: Developers',
'License :: OSI Approved :: MIT License',
'Natural Language :: English',
'Programming Language :: Python :: 3.4',
'Programming Language :: Python :: 3.5',
'Programming Language :: Python :: 3.6',
],
description="Predict splicing variant effect from VCF",
install_requires=requirements,
license="MIT license",
long_description=readme + '\n\n' + history,
long_description_content_type='text/markdown',
entry_points='''
[console_scripts]
mmsplice=mmsplice.main:cli
''',
include_package_data=True,
keywords='mmsplice',
name='mmsplice',
packages=find_packages(include=['mmsplice']),
setup_requires=setup_requirements,
test_suite='tests',
tests_require=test_requirements,
url='https://github.com/gagneurlab/mmsplice',
version='2.4.0',
zip_safe=False
)