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Diamond: optional outputs produced do not respect tool form settings #6170

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jennaj opened this issue Jul 22, 2024 · 0 comments · May be fixed by #6262
Open

Diamond: optional outputs produced do not respect tool form settings #6170

jennaj opened this issue Jul 22, 2024 · 0 comments · May be fixed by #6262
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@jennaj
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jennaj commented Jul 22, 2024

Tool_id toolshed.g2.bx.psu.edu/repos/bgruening/diamond/bg_diamond/2.0.15+galaxy0
Test history https://usegalaxy.eu/u/jenj/h/test-diamond

Output options: Output aligned/unaligned queries to separate file

  • aligned + unaligned = both written (good!)
  • aligned only = none written (should be aligned file, only, but nothing extra is produced)
  • unaligned only = both written (should be unaligned file, only, not both)

Tool form also has a typo in that option:
diamond-typo

Problem seems to be here. Maybe @abretaud or @wm75 can help?

https://github.com/galaxyproject/tools-iuc/blame/main/tools/diamond/diamond.xml#L298-L319

Thanks!

Reported at https://help.galaxyproject.org/t/diamond-all-option-not-working/11838

@bgruening bgruening self-assigned this Aug 11, 2024
@abretaud abretaud linked a pull request Aug 21, 2024 that will close this issue
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