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376 Open 766 Closed
376 Open 766 Closed
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Issues list

ToolTemplatingException: toolshed.g2.bx.psu.edu/repos/iuc/bcftools_call/bcftools_call/1.15.1+galaxy3 affects UseGalaxy.* bug
#6177 opened Jul 24, 2024 by galaxyproject-sentryintegration bot
1
ToolTemplatingException: toolshed.g2.bx.psu.edu/repos/iuc/pear/iuc_pear/0.9.6.2 affects UseGalaxy.* bug
#6176 opened Jul 24, 2024 by galaxyproject-sentryintegration bot
Enhancement: Add in server indexed reference genomes to "basil Breakpoint detection, including large insertions"
#6173 opened Jul 24, 2024 by jennaj
fasterq_dump misses the clip option
#6171 opened Jul 23, 2024 by paulzierep
2
Diamond: optional outputs produced do not respect tool form settings
#6170 opened Jul 22, 2024 by jennaj
Tool Request: HERRO
#6166 opened Jul 21, 2024 by jessemartin132
Update kraken-related tools to enable use of both Kraken and Kraken2 indexes
#6160 opened Jul 17, 2024 by jennaj
2 tasks
Idea: Add test cases to DMs that checks if all remote urls exist
#6151 opened Jul 15, 2024 by paulzierep
BUSCO --miniprot parameter seems incorrectly handled
#6147 opened Jul 14, 2024 by Hymenium
1
add new tool pyclone-vi
#6143 opened Jul 12, 2024 by bdartigues
Unclear explanation and options for Funannotate --augustus_species parameter
#6137 opened Jul 8, 2024 by Hymenium
2
goenrichment ignores JAVA_OPTS and JAVA_TOOL_OPTIONS
#6135 opened Jul 8, 2024 by martindemko
2
BUSCO gff file(s) not captured in output when Augustus used, no errors as stderr suppressed
#6132 opened Jul 8, 2024 by Hymenium
Bug in ampvis2 tax_show
#6126 opened Jul 4, 2024 by paulzierep
2
Tool Request: Plugin: Adding nonsense mediated decay (NMD) plugin to ensembl_vep
#6122 opened Jul 2, 2024 by prao123
1
Update Trinity wrapper to correctly handle inputs for genome guided mode
#6120 opened Jul 1, 2024 by Hymenium
Manipulate AnnData tool
#6115 opened Jun 29, 2024 by nomadscientist
Add gitpod environment
#6111 opened Jun 27, 2024 by mvdbeek
Krakentools - Combine has the Galaxy Directory labelled as the sample name in the output file - improvement required.
#6081 opened Jun 13, 2024 by mthang
Update DIMet
#6039 opened May 29, 2024 by bdartigues
Anndata new features add
#6025 opened May 23, 2024 by pavanvidem
4
Enhancement: allow BiG-SCAPE to process inputs without a required .gbk extension in dataset filename
#6015 opened May 17, 2024 by jennaj
Update antiSMASH to version 7.1.0.1
#6010 opened May 17, 2024 by SPBorkar04
1
revoluzer suite: Add format description to help
#6008 opened May 14, 2024 by bernt-matthias
@bernt-matthias
BMGE tool would be helpful on the public server tool request
#5998 opened May 7, 2024 by jaredbernard
2
ProTip! Adding no:label will show everything without a label.