v1.0.2

Bugfix release including Python 3.7 compatibility

JOSS publication version

Minor bug fix release.

v1.0.0

Official 1.0 release

1.0b3

bugfix for command line use

v1.0b2

Added support for CPython 3.3 and PyPy3

v1.0b1

First beta release of fully featured version with complete unit test coverage. Code deliberately not covered by tests is marked #pragma: no cover so it does not show up in the coverage tool.

Several minor corner case bugs were corrected, and additional features such as --conservative and --cigar_score added.

recommit v0.5.0

Note that due to a commit error between branches v0.4.0 will not correctly process paired end files.  Read pairs will only be assigned based on the AS score of the reverse read.  For most uses this bug is conservative, but all users should update to v0.5.0
v0.5.0 refactors the score comparison logic and adds the ability to filter on minimum alignment score