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eqtlgen transeqtl #958

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eqtlgen transeqtl #958

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ypar
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@ypar ypar commented Apr 15, 2020

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ypar commented Apr 20, 2020

This PR is currently stalled due to a missing data issue in the input file. Currently, the submitted data does not contain standard error measures. And it also contains at least one error in the chromosomal labels (chromosome "-10"), which is handled as an exclusion criteria.

Although SE certainly is useful for downstream analyses as well as proper interpretation of results, many methods may run based on sample size and p-value as well. I am evaluating whether to relax this requirement for cimr-d submissions with a note.

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