Discussions

• 1 You must be logged in to vote

  🙏

  What is the root frequency distribution and how to determine which to use

  tsa4a12 asked Sep 9, 2024 in Q&A · Answered

  

  

  1
• 1 You must be logged in to vote

  🙏

  Name of the software: "CAFE5", "CAFE 5", or just "CAFE"?

  heavywatal asked Aug 19, 2024 in Q&A · Unanswered

  

  

  1
• 1 You must be logged in to vote

  🙏

  result_summary.tsv

  TCHeaven asked Aug 1, 2024 in Q&A · Unanswered

  

  

  1
• 1 You must be logged in to vote

  🙏

  Species not found in gene family

  arunsethuraman asked Mar 23, 2021 in Q&A · Answered

  

  

  

  

  22
• 0 You must be logged in to vote

  🙏

  How to determine gamma value (k) in CAFE5

  LeoVincenzi asked Jul 22, 2024 in Q&A · Answered

  

  

  1
• 1 You must be logged in to vote

  🙏

  not found in gene family

  miaommpt asked Jun 14, 2024 in Q&A · Answered

  

  

  1
• 1 You must be logged in to vote

  🙏

  Running simulation to choose best model

  timeforthemoonnight asked Apr 15, 2024 in Q&A · Closed · Unanswered

  

  

  0
• 1 You must be logged in to vote

  🙏

  How to order tree with separate lambdas

  timeforthemoonnight asked Apr 4, 2024 in Q&A · Answered

  

  

  3
• 1 You must be logged in to vote

  💬

  Step-by-step best practices for CAFE5

  adeoliveira86 started Feb 14, 2024 in General

  

  

  1
• 2 You must be logged in to vote

  🙏

  Missing Gene Families

  Paul-Donat asked Feb 1, 2024 in Q&A · Answered

  

  

  

  

  2
• 1 You must be logged in to vote

  🙏

  RE: Signifcant but have "+0" change

  Malabady asked Mar 29, 2024 in Q&A · Answered

  

  

  1
• 0 You must be logged in to vote

  🙏

  terminate called after throwing an instance of 'std::out_of_range'

  wh44496 asked Mar 24, 2024 in Q&A · Answered

  

  

  1
• 1 You must be logged in to vote

  🙏

  After multiple cycles of deleting families, rerunning cafe5 still reports errors. And some erroes with lowering the lambda value ( 0.0001 )

  MYP0130 asked Mar 12, 2024 in Q&A · Answered

  

  

  

  

  3
• 1 You must be logged in to vote

  🙏

  Need help finding a summary output file

  rosspdu asked Apr 3, 2024 in Q&A · Answered

  

  

  1
• 1 You must be logged in to vote

  🙏

  Is there exist correlation between gene family expansion and gene copy number increase?

  wjl-cpu asked Jan 19, 2024 in Q&A · Answered

  

  

  1
• 1 You must be logged in to vote

  🙏

  How to compare the likelihood in two models?

  YuzhouGong asked Jan 28, 2024 in Q&A · Answered

  

  

  1
• 1 You must be logged in to vote

  🙏

  Determining which amount of lambdas is best

  hunterkwalt asked Nov 28, 2023 in Q&A · Answered

  

  

  1
• 1 You must be logged in to vote

  🙏

  Questions about expanding and contracting genes on tree branches and species nodes

  Wenwen012345 asked Jan 2, 2024 in Q&A · Answered

  

  

  1
• 1 You must be logged in to vote

  🙏

  Failed to initialize any reasonable values

  sophie-03 asked Oct 18, 2023 in Q&A · Answered

  

  

  4
• 1 You must be logged in to vote

  🙏

  how to compare likelihoods of lambda models

  chun-he-316 asked Nov 6, 2023 in Q&A · Answered

  

  

  3
• 1 You must be logged in to vote

  🙏

  Build error: undefined reference to std::regex_iterator

  davidzxs123344 asked Sep 11, 2023 in Q&A · Answered

  

  

  

  

  8
• 1 You must be logged in to vote

  🙏

  what is the use of simulated data?

  suncpark asked Oct 13, 2023 in Q&A · Answered

  

  

  1
• 1 You must be logged in to vote

  🙏

  Memory requirements

  MWSchmid asked Oct 2, 2023 in Q&A · Answered

  

  

  4
• 1 You must be logged in to vote

  🙏

  Nelson-Meads optimizer

  jaredbernard asked Sep 15, 2023 in Q&A · Answered

  

  

  2
• 1 You must be logged in to vote

  💬

  Families with largest size differentials

  Xiaojun928 started Jul 2, 2020 in General

  

  

  

  

  6