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Fixes alignment of boxplots in Boxplot.R #208

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Fixes alignment of boxplots in Boxplot.R #208

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7256db7
Update Boxplot.R
eeenilsson Apr 28, 2021
6c6a930
blac colored lines for boxplots
eeenilsson Apr 16, 2023
1d6d580
added notches and horizontal line at median for boxplots
eeenilsson Apr 24, 2023
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15 changes: 10 additions & 5 deletions R/Boxplot.R
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Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,6 @@
IntersectionBoxPlot <- function(data1, data2, start_col, names){
end_col <- ((start_col + length(names)) - 1)
data2 <- data2[which(rowSums(data2[ ,start_col:end_col]) != 0), ]
#tagging because x axis values need to be 1:number of sets so they line up with their intersections
data2$tag <- 1:nrow(data2)
sets <- list()
intersections <- list()
Expand Down Expand Up @@ -42,16 +41,22 @@ BoxPlotsPlot <- function(bdat, att, att_color){
bdat$x <- as.factor(bdat$x)
boxplots <- ggplotGrob(ggplot()
+ theme_bw() +ylab(yaxis)
+ scale_x_discrete(limits = plot_lims, expand = c(0,0))
+ scale_x_discrete(limits = factor(plot_lims), expand = c(0,0))
+ theme(plot.margin = unit(c(-0.7,0,0,0), "cm"),
axis.title.y = element_text(vjust = -0.8),
axis.title.y = element_text(vjust = -0.6, size = 10),
axis.ticks.x = element_blank(),
axis.text.x = element_blank(),
panel.border = element_blank(),
panel.grid.minor = element_blank(),
panel.grid.major = element_blank(),
axis.title.x = element_blank())
+ geom_boxplot(data = bdat, aes_string(x="x", y="attribute"),
fill = att_color, colour = "gray80"))
fill = att_color, colour = "gray43",
outlier.size = 0.3
, notch = TRUE
)
+ geom_hline(aes(yintercept = median(bdat$attribute, na.rm = TRUE)), alpha = 0.3)

)
return(boxplots)
}
}
4 changes: 2 additions & 2 deletions R/MainBar.R
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Expand Up @@ -125,8 +125,8 @@ Make_main_bar <- function(Main_bar_data, Q, show_num, ratios, customQ, number_an
+ xlab(NULL) + ylab(ylabel) +labs(title = NULL)
+ theme(panel.background = element_rect(fill = "white"),
plot.margin = unit(c(0.5,0.5,bottom_margin,0.5), "lines"), panel.border = element_blank(),
axis.title.y = element_text(vjust = -0.8, size = 8.3*y_axis_title_scale), axis.text.y = element_text(vjust=0.3,
size=7*y_axis_tick_label_scale)))
axis.title.y = element_text(vjust = -0.8, size = 10*y_axis_title_scale), axis.text.y = element_text(vjust=0.3,
size=10*y_axis_tick_label_scale)))
if((show_num == "yes") || (show_num == "Yes")){
if(is.null(number.colors)) {
Main_bar_plot <- (Main_bar_plot + geom_text(aes_string(label = "freq"), size = 2.2*intersection_size_number_scale, vjust = -1,
Expand Down