neurotrees_copy: added support for distributing input tree to multipl… #139
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: CI | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| jobs: | |
| build-macos: | |
| runs-on: macOS-latest | |
| strategy: | |
| matrix: | |
| # python-version: [3.5, 3.6, 3.7, 3.8] | |
| python-version: [3.7, 3.8, 3.9] | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v1 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| export FC=gfortran | |
| export F77=gfortran | |
| brew install cmake hdf5-mpi | |
| python -m pip install --upgrade pip setuptools wheel | |
| python -m pip install --upgrade numpy mpi4py h5py | |
| pip install flake8 pytest | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| - name: Build | |
| run: | | |
| export PATH="/usr/local/opt/hdf5-parallel/bin:$PATH" | |
| export LDFLAGS="-L/usr/local/opt/hdf5-parallel/lib" | |
| export CPPFLAGS="-I/usr/local/opt/hdf5-parallel/include" | |
| export CC=mpicc | |
| export CXX=mpicxx | |
| python -m pip install -v . | |
| - name: Test import | |
| run: | | |
| python -m pip show -f neuroh5 | |
| python ./tests/test_import.py | |
| - name: Test read and write | |
| run: | | |
| python ./tests/test_write_cell_attr.py | |
| build-linux: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [3.7, 3.8, 3.9] | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| sudo apt update -y && sudo apt upgrade | |
| sudo apt install build-essential cmake mpich libhdf5-mpich-dev | |
| python -m pip install --upgrade pip setuptools wheel | |
| python -m pip install --upgrade numpy mpi4py h5py | |
| pip install flake8 pytest | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| - name: Build | |
| run: | | |
| python -m pip install -v . | |
| - name: Test import | |
| run: | | |
| python -m pip show -f neuroh5 | |
| python ./tests/test_import.py | |
| - name: Test read and write | |
| run: | | |
| python ./tests/test_write_cell_attr.py |