neurotrees_copy: added support for distributing input tree to multipl… #139
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# This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
name: CI | |
on: | |
push: | |
branches: [ master ] | |
pull_request: | |
branches: [ master ] | |
jobs: | |
build-macos: | |
runs-on: macOS-latest | |
strategy: | |
matrix: | |
# python-version: [3.5, 3.6, 3.7, 3.8] | |
python-version: [3.7, 3.8, 3.9] | |
steps: | |
- name: Checkout | |
uses: actions/checkout@v1 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v2 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies | |
run: | | |
export FC=gfortran | |
export F77=gfortran | |
brew install cmake hdf5-mpi | |
python -m pip install --upgrade pip setuptools wheel | |
python -m pip install --upgrade numpy mpi4py h5py | |
pip install flake8 pytest | |
if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
- name: Build | |
run: | | |
export PATH="/usr/local/opt/hdf5-parallel/bin:$PATH" | |
export LDFLAGS="-L/usr/local/opt/hdf5-parallel/lib" | |
export CPPFLAGS="-I/usr/local/opt/hdf5-parallel/include" | |
export CC=mpicc | |
export CXX=mpicxx | |
python -m pip install -v . | |
- name: Test import | |
run: | | |
python -m pip show -f neuroh5 | |
python ./tests/test_import.py | |
- name: Test read and write | |
run: | | |
python ./tests/test_write_cell_attr.py | |
build-linux: | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
python-version: [3.7, 3.8, 3.9] | |
steps: | |
- name: Checkout | |
uses: actions/checkout@v2 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v2 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies | |
run: | | |
sudo apt update -y && sudo apt upgrade | |
sudo apt install build-essential cmake mpich libhdf5-mpich-dev | |
python -m pip install --upgrade pip setuptools wheel | |
python -m pip install --upgrade numpy mpi4py h5py | |
pip install flake8 pytest | |
if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
- name: Build | |
run: | | |
python -m pip install -v . | |
- name: Test import | |
run: | | |
python -m pip show -f neuroh5 | |
python ./tests/test_import.py | |
- name: Test read and write | |
run: | | |
python ./tests/test_write_cell_attr.py |