manuscript AIP

for NCOMM manuscript DOI

microfiltR

in v1.1, I have added plotting functions and renamed the central filtering function (previously: filter.dataset) to microfilter, for naming consistency with the package. v1.2 will feature control sequence alignment from a phyloseq refseq slot, if provided, to increase flexibility and enable control sequence alignment for datasets not processed with dada2.

marker gene processing functions

this is version 1.0 of a suite of marker gene processing and filtering functions. These functions have been designed to make the processing and analysis of marker gene studies more transparent and reproducible. Specifically, these functions enable efficient estimation and application of sample and taxa filter thresholds in microbial community datasets, and facilitate the writing of such datasets to external files.