Cmito is a tool that enables dense reconstruction of mitochondria in C. elegans electron microscopy (EM) image stacks using convolutional neural network (CNN).
# Clone repository
git clone https://github.com/jabae/Cmito.git
cd Cmito
# Install requirements
pip install -r requirements
Stage | Link to reconstructions | Source |
---|---|---|
L1 | L1 reconstructions | Witvliet et al. (2021)1 Dataset 2 |
L2 | L2 reconstructions | Witvliet et al. (2021)1 Dataset 5 |
L3 | L3 reconstructions | Witvliet et al. (2021)1 Dataset 6 |
Adult | Adult reconstructions | Witvliet et al. (2021)1 Dataset 8 |
Dauer | Dauer reconstructions | Yim et al. (2024)2 Dataset |
Footnotes
-
Witvliet, D., Mulcahy, B., Mitchell, J.K., Meirovitch, Y., Berger, D.R., Wu, Y., Liu, Y., Koh, W.X., Parvathala, R., Holmyard, D., et al. (2021). Connectomes across development reveal principles of brain maturation. Nature 596, 257–261. ↩ ↩2 ↩3 ↩4
-
Yim, H., Choe, D.T., Bae, J.A., Choi, M.-K., Kang, H.-M., Nguyen, K.C.Q., Ahn, S., Bahn, S.-K., Yang, H., Hall, D.H., et al. (2024). Comparative connectomics of dauer reveals developmental plasticity. Nat. Commun. 15, 1546. ↩