MarkovWeightedEFMs.jl

This package is used to decompose steady state metabolic fluxes onto elementary flux mode weights. Currently, this package only supports closed-loop networks of unimolecular reactions. Click the "docs" badge above to access package the documentation.

Installation

To install this package, open a julia session and enter:

julia> ]
(@v1.6) pkg> add https://github.com/jchitpin/MarkovWeightedEFMs.jl.git

Alternatively, you can load the Pkg package and install by:

julia> using Pkg
julia> Pkg.add("https://github.com/jchitpin/MarkovWeightedEFMs.jl.git")

Usage

Once installed, the package is loaded in a julia session by typing:

julia> using MarkovWeightedEFMs

Please read the docs for a guided tutorial and function descriptions.

Citing MarkovWeightedEFMs.jl

Chitpin JG, Perkins TJ. A Markov constraint to uniquely identify elementary flux mode weights in unimolecular metabolic networks, J Theor Biol. 2023 Oct 5. doi: doi: 10.1016/j.jtbi.2023.111632. PMID: 37804942.