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1. pandoc-ditaa pandoc-ditaa Public

   Pandoc-ditaa is a pandoc lua filter that used ditaa to convert ascii digrams in markdown files into images.

   Lua

2. nbib-to-bib nbib-to-bib Public

   Converts a nbib file to a bibtex file

   C 1

3. alnSeq alnSeq Public

   AlnSeq runs a c coded Smith Waterman, Needleman Wunsch, and an Hirschberg.

   C

4. fqGetIds fqGetIds Public

   A program using SMID vectors to extract fastq reads by read ids.

   C

5. getDIIds getDIIds Public

   Find complete diRNA, mvRNA, and vRNA influenza reads ids in long reads. Use something like fqGetIds or seqkit to extract reads by read ids.

   C

6. getHaPath getHaPath Public

   Checks to see if a flu HA sequence belongs to a high path or low path flu strain.

   C