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1. broadinstitute/celligner2 broadinstitute/celligner2 Public

   A new version of the celligner package using VAEs. Inspired from the Theis lab's scArches.

   Jupyter Notebook 4

2. broadinstitute/depmap_omics broadinstitute/depmap_omics Public

   What you need to process the Quarterly DepMap-Omics releases from Terra

   HTML 106 22

3. broadinstitute/genepy broadinstitute/genepy Public

   Forked from jkobject/genepy

   Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python

   Python 19 5

4. flatironinstitute/CaImAn flatironinstitute/CaImAn Public

   Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

   Python 620 364

5. scDataLoader scDataLoader Public

   a dataloader to work with large single cell datasets from lamindb

   Jupyter Notebook 13 1

6. scPRINT scPRINT Public

   single cell foundation model for Gene network inference and more

   Jupyter Notebook 11 1