OSError: [Errno 18] Invalid cross-device link:

[yujun2017]

tb-profiler 4.4.1 has "OSError: [Errno 18] Invalid cross-device link" error. Same error has been fixed in ntm-profiler.

[jodyphelan]

Thanks @yujun2017, glad to ntm-profiler is running ok on your side.
I thought this also fixed the tb-profiler issue but there might still be a bug hiding in the code. I'll check it out and let you know what I find.

[jodyphelan]

Could you attach the full log file?

[jodyphelan]

I found it! Another use of os.rename which I've changed to shutil.move. I'll get a new bioconda release going.

[jodyphelan]

This sould be fixed in v4.4.2 on bioconda

[yujun2017]

Thank you so much!
By the way, do you have connect with snpEff author? There are lot of vulnerabilities (11 so far) in snpEff.jar file. We got the notice from NIH and ask to fix these vulnerabilities. Most vulnerabilities are library version. I want to know if we can build snpEff.jar file in tb-profiler because I have submitted an issue in snpEff github and no people response.