v1.0.6 - bug fix

• Bug fix for issue 21

v1.0.5

• reduce memory usage in RMI building (For human reference, 72GB -> 57GB)
• support for adaptive model number selection for RMI.

v1.0.4 - build additional indices at runtime

bwa-meme uses runtime index build as default. See #10

• bwa-meme index .possa_packed and .ref2sa_packed are now removed at default setting. Index build requires less than 1 hour with 16~32 threads.
• bwa-meme mem -7 loads ref.pos_packed file at startup. Depending on the bwa-meme mode, other indices (.possa_packed and ref2sa_packed) are built based on it (instead of reading files).

Minor update 220504: Source_BWA-MEME_r1.tar.gz

• Added mimalloc as default
• Minor fix in version number printed

v1.0.3 - index build code optimization

removed unnecessary operations and support multi-thread

• removed BWT building in bwa-meme index -a meme, which is unnecessary
• support for multi-threaded index build: .suffixarray_uint64, .pos_packed, .possa_packed, .ref2sa_packed
• removed requirement for .suffixarray_uint64 file at runtime
• usage info update in bwa-meme index

Minor Update

• Compile all BWA-MEME modes at once.

Minor update

• Changed binary name to avoid conflict with BWA-MEM2 in Bioconda.
• Moved Mode variable to Makefile

Mode 1 : 38GB RAM usage for index in runtime (without any additional memory structures)
Mode 2 : 88GB RAM usage for index in runtime (without Inverse Suffix Array)
Mode 3 : 118GB RAM usage for index in runtime

Initial Release

Mode 1 : 38GB RAM usage for index in runtime (without any additional memory structures)
Mode 2 : 88GB RAM usage for index in runtime (without Inverse Suffix Array)
Mode 3 : 118GB RAM usage for index in runtime