LAMMPS-toolbox

This repository contains files which can be used for pre- and post-processing of LAMMPS data.

generate_polymer_crowder.py

This file generates an input file accepted in LAMMPS. It generates the initial co-ordinates of a charged/neutral polymer and counterions.

generate_RingPolymer.py

This code generates the lammps data file of multiple ring polymers which are stacked along z-axis.

plot_loglammps.ipynb

This file returns a set of subplots which have plots of the data extracted from log.lammps file.