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Whole genome analysis teaching for the course 'MMB-114 Exploratory microbial research - lab course' of the University of Helsinki.

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MMB-114 Exploratory microbial research - lab course

👨‍💻 Antti Karkman
🏛️ University of Helsinki
✉️ [email protected]

Genome analysis module of the course "MMB-114 Exploratory microbial research - lab course" of the University of Helsinki.

Learning outcomes

After completing this module, you will be able to:

  • Choose the most adequate platform for your genome sequencing experiment
  • Investigate and judge the quality of sequencing data
  • Make use of a variety of tools to:
    • Process whole genome sequencing data
    • Assemble and annotate whole genome sequencing data
    • Predict metabolic pathways from assembled and annotated genomes

General instructions

Course content

Activity
Day 1: UNIX and CSC Lecture slides Exercises
Day 2: Read trimming Lecture slides Exercises
Day 3: Checkup No activities No activities
Day 4: Genome assembly Lecture slides Exercises
Day 5: Genome annotation Lecture slides Exercises
Day 6: Metabolic pathway analysis Lecture slides Exercises

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Whole genome analysis teaching for the course 'MMB-114 Exploratory microbial research - lab course' of the University of Helsinki.

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