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1. structural_variant_OGM_WGS_pipeline structural_variant_OGM_WGS_pipeline Public

   A combination of optical genome mapping with Bionano and whole genome sequencing short-read data. This pipeline was created to help integrate structural variant calling from these two technologies.

   Shell

2. PCA-Ethnicity-Determination-from-WGS-Data PCA-Ethnicity-Determination-from-WGS-Data Public

   A pipeline utilizing PCA on 1000 genomes and WGS data from your own samples to determine or validate ancestry of an individual.

   Shell 3

3. GATK-WGS-Pipeline GATK-WGS-Pipeline Public

   GATK WGS workflow

   Shell

4. Differentially-mutated-genes Differentially-mutated-genes Public

   Fisher's tests (with or without) correction for multiple testing on 2x2 contingency tables. Uses a list of genes from two populations to test if any are significantly mutated/disrupted by SVs in on…

   R

5. SV-calling-with-SpeedSeq SV-calling-with-SpeedSeq Public

   A workflow for using SpeedSeq to align and call SVs from WGS data

   Shell 1

6. SNV-Annotation-Tools SNV-Annotation-Tools Public

   Useful tools for variant annotation

   1