This is a version two upgrade of the CRF_ID provided in https://github.com/lu-lab/CRF_Cell-ID. The upgrade expands the tool's generalizability to multi-cell images. Please refer to the manuscript for details.
Please make sure to keep the name of the directory as CRF_Cell_ID
so that walkthrough instructions can be run without changing any paths.
git clone https://github.com/lu-lab/CRF-Cell-ID-2.0.git
Click on Clone or download
button on top right corner and Download ZIP
- MATLAB 2018b
- UGM Toolbox
- CPD registration (optional, required only for comparisons)
- Vaa3D (optional, required only for visualizing ground-truth annotations)
UGM and CPD are provided in the repository so there is no need to download them separately. However please consider citing them.