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Refactor Colab to improve visualization #64

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luque82 opened this issue Sep 6, 2023 · 0 comments
Open

Refactor Colab to improve visualization #64

luque82 opened this issue Sep 6, 2023 · 0 comments
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bug Something isn't working documentation Improvements or additions to documentation enhancement New feature or request

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luque82 commented Sep 6, 2023

Referees reported having several issues visualizing structures in the Colab notebook. Troubleshoot the notebook and refactor to minimize issues visualizing the results:

  • Test the structures used by the reviewers.
  • Determine if having a separate cell after the execution of the Colab notebook would be more robust.
  • Modify the Quick-Start guide to reflect the changes and guide the users.
  • Write an online tutorial to help users navigate an example. Generate an issue to record the tutorial and include the link in the Quick-Start Guide and the online tutorial.
@luque82 luque82 added bug Something isn't working documentation Improvements or additions to documentation enhancement New feature or request labels Sep 6, 2023
@luque82 luque82 self-assigned this Sep 6, 2023
luque82 added a commit that referenced this issue Sep 6, 2023
@luque82
Move NGL block after Download block. Issue #64.
e7e5273
luque82 added a commit that referenced this issue Sep 6, 2023
@luque82
Refactor Installation block to install NGL viewer. Issue #64.
77b0551
luque82 added a commit that referenced this issue Sep 6, 2023
@luque82
Move widget manager near NGL viewer installation. Issue #64.
a4e4d8e
luque82 added a commit that referenced this issue Sep 6, 2023
@luque82
Remove deprecated widget cell associated with NGL. Issue #64.
08ef97b
luque82 added a commit that referenced this issue Sep 6, 2023
@luque82
Debug structure files needed for report folder. Issue #64.
054c014
colintravisbrown added a commit that referenced this issue Oct 3, 2023
@colintravisbrown
New version of the colab notebook that should work more consistently.…
6589a94 
… To be tested further #64
colintravisbrown added a commit that referenced this issue Oct 3, 2023
@colintravisbrown
Removed unnecessary cells, swapped location of capsid snapshot #64
be89132
colintravisbrown added a commit that referenced this issue Oct 4, 2023
@colintravisbrown
Added guide for visualization, adjusted the quick-start guide to match.
5f45cef 
#64
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