This folder contains an R package with code to reproduce the analyses in our 2018 Immunity paper. The R package contained in this folder is built around Seurat version 1.4. Consult the package index and documentation (?knn_classifier, ?custom_feature_plot, ?FetchDataZeroPad, ?get_ortholog) for more information. To get started reproducing our figures, open up main.Rmd from the companion repo maehrlab/thymusatlasanalysis.
We're passionate about reproducibility, so if you have any trouble, please contact eric epu kernfeld bu vnbttnfe epu fev, where the address has been one-letter shifted to hide from robots.