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Differential Expression Pipeline

A pipeline for analising differential expression data.

Usage

Place your .fastq files into the data/ directory and execute:

$ condor submit

Your cont files will be on results/ when the process ends.

Options

NPROC environment variable can be specified to run multiple processes simultaneously.

OPTS environment variable can be set to alter the execution parameters.

REFERENCE environment variable can be set to select which reference genome will be in use.

Design considerations

@@What was taken into account to build this project?@@

Algorithm

@@Which steps are necessary to solve the problem.@@

Requirements

References

(https://doi.org/10.1186/1471-2105-14-91 "")

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