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Matsen Group

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  1. gctree gctree Public

    GCtree: phylogenetic inference of genotype-collapsed trees

    Python 16 2

  2. sumrep sumrep Public

    Summary statistics for repertoires

    R 16 6

  3. vampire vampire Public

    🧛 Deep generative models for TCR sequences 🧛

    Python 16 4

  4. olmsted olmsted Public

    B-cell repertoire and clonal family tree explorer

    JavaScript 15 4

  5. phippery phippery Public

    Python 13 2

  6. gapml gapml Public

    Python 11 4

Repositories

Showing 10 of 105 repositories
  • larch Public

    Inference and manipulation of history DAGs

    matsengrp/larch’s past year of commit activity
    C++ 2 2 14 2 Updated Sep 13, 2024
  • python-package-template Public template

    A template python package, put together by Jared and Dave

    matsengrp/python-package-template’s past year of commit activity
    0 MIT 0 0 0 Updated Sep 11, 2024
  • phylostability Public
    matsengrp/phylostability’s past year of commit activity
    Python 1 0 0 1 Updated Aug 30, 2024
  • gctree Public

    GCtree: phylogenetic inference of genotype-collapsed trees

    matsengrp/gctree’s past year of commit activity
    Python 16 GPL-3.0 2 12 3 Updated Aug 27, 2024
  • transport Public
    matsengrp/transport’s past year of commit activity
    Python 2 0 1 2 Updated Aug 24, 2024
  • multidms Public

    Joint modeling of multiple deep mutational scanning experiments

    matsengrp/multidms’s past year of commit activity
    Jupyter Notebook 1 MIT 0 19 1 Updated Aug 13, 2024
  • sci-space-v2 Public
    matsengrp/sci-space-v2’s past year of commit activity
    Jupyter Notebook 2 0 1 0 Updated Aug 6, 2024
  • dnsm-json-database Public
    matsengrp/dnsm-json-database’s past year of commit activity
    Python 0 0 0 0 Updated Aug 6, 2024
  • phip-flow Public

    A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets

    matsengrp/phip-flow’s past year of commit activity
    Python 10 MIT 6 0 0 Updated Jul 22, 2024
  • phip-viz Public
    matsengrp/phip-viz’s past year of commit activity
    Python 3 0 11 0 Updated Jul 16, 2024
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