| 16S | ITS2 | ITS1 | acdS | nifH | AMF 18S | nosZ |
|---|---|---|---|---|---|---|
| V4_515F_New: 5'-GTGYCAGCMGCCGCGGTAA V4_806R_New: 5'-GGACTACNVGGGTWTCTAAT |
ITS3: 5'-GCATCGATGAAGAACGCAGC ITS4: 5'-TCCTCCGCTTATTGATATGC |
ITS1: 5'-GAACCWGCGGARGGATCA ITS2: 5'-GCTGCGTTCTTCATCGATGC |
acdSF5: 5'-GGCAACAAGMYSCGCAAGCT acdSR8: 5'-CTGCACSAGSACGCACTTCA |
nifH2: 5'-TGYGAYCCNAARGCNGA nifH1: 5'-ADNGCCATCATYTCNCC |
AMDGR_NS31: 5'-TTGGAGGGCAAGTCTGGTGCC AMDGR: 5'-CCCAACTATCCCTATTAATCAT |
nosZ1mod_f: 5'-WCSYTSTTCMTSGAYAGCCAG nosZmod_R: 5'-ATRTCGATSARCTGVKCRTTYTC |
The 18S QIIME-compatible database is designed for analyzing eukaryotic microbial communities using the 18S ribosomal RNA (rRNA) gene as a molecular marker. The database includes:
- reads.qza: Processed 18S rRNA gene sequence reads
- taxa.qza: Taxonomic annotations linked to the reads
- classifier.qza: Trained classifier for accurate taxonomic classification
Download 18S Database | Alternative Link
The 16S QIIME-compatible database is tailored for exploring bacterial and archaeal communities, utilizing the 16S ribosomal RNA (rRNA) gene as a marker. The database includes:
- reads.qza: Processed sequence reads
- taxa.qza: Taxonomic annotations for the reads
- classifier.qza: Trained classifier for precise taxonomic assignments
Download 16S Database | Alternative Link
The ITS QIIME-compatible database is developed for analyzing fungal communities using the Internal Transcribed Spacer (ITS) region as a gene marker. The database includes:
- reads.qza: Processed ITS sequence reads
- taxa.qza: Taxonomic information associated with the reads
- classifier.qza: Trained classifier for accurate taxonomic classification
Download UNITE-V8 ITS Database | Alternative Link
- reads.qza: Processed ITS sequence reads
- taxa.qza: Taxonomic information associated with the reads
- classifier.qza: Trained classifier for accurate taxonomic classification
Download UNITE-V9 ITS Database | Alternative Link
The nifH QIIME-compatible database focuses on nitrogen-fixing bacteria, utilizing the nitrogenase reductase (nifH) gene as a marker. The database includes:
- reads.qza: Processed nifH gene sequence reads
- taxa.qza: Taxonomic annotations for the reads
- classifier.qza: Trained classifier for precise taxonomic assignments
Download nifH Database | Alternative Link
The acdS QIIME-compatible database is customized for studying bacterial communities involved in the biogeochemical cycling of ethylene, employing the 1-aminocyclopropane-1-carboxylate deaminase (acdS) gene as a marker. The database includes:
- reads.qza: Processed acdS gene sequence reads
- taxa.qza: Taxonomic annotations for the reads
- classifier.qza: Trained classifier for accurate taxonomic classification
Download acdS Database | Alternative Link
The Eukaryota QIIME-compatible database is tailored for analyzing eukaryotic communities, utilizing various gene markers such as ITS & 18S rRNA. The database includes:
- reads.qza: Processed sequence reads for eukaryotic genes
- taxa.qza: Taxonomic annotations associated with the sequence reads
- classifier.qza: Trained classifier for precise taxonomic classification of eukaryotic sequences
Download Eukaryota Database | Alternative Link
The nosZ QIIME-compatible database focuses on denitrifying bacteria, utilizing the nitrous oxide reductase (nosZ) gene as a marker. The database includes:
- reads.qza: Processed nosZ gene sequence reads
- taxa.qza: Taxonomic annotations for the reads
- classifier.qza: Trained classifier for precise taxonomic assignments
Download nosZ Database | Alternative Link
QIIME2-Compatible-library by Mitra & Marjan Ghotbi is licensed under Attribution 4.0 International
