mghotbi / The-little-things Public

The-little-things consists of several functions, all relevant to microbiome analyses, and is user-friendly for phyloseq users

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Name		Name	Last commit message	Last commit date
Latest commit History 30 Commits
Bartlett.test.R		Bartlett.test.R
Extended_ColorPlallet.R		Extended_ColorPlallet.R
Install_load_PKGs.R		Install_load_PKGs.R
README.md		README.md
Ridge_Plot_it.R		Ridge_Plot_it.R
Shapiro_Wilk_test.R		Shapiro_Wilk_test.R
Spiked_sp_Summ.R		Spiked_sp_Summ.R
SumSdSe.R		SumSdSe.R
Summ_ASV_ID.R		Summ_ASV_ID.R
Summ_list_spiked_species.R		Summ_list_spiked_species.R
Summ_sample_ID.R		Summ_sample_ID.R
TIDY.R		TIDY.R
calculate_detailed_summary_stats.R		calculate_detailed_summary_stats.R
calculate_simple_summary_stats.R		calculate_simple_summary_stats.R
calculate_spikeIn_factors.R		calculate_spikeIn_factors.R
calculate_spike_percentage_hascodes.R		calculate_spike_percentage_hascodes.R
changePhyloseqToVegan.R		changePhyloseqToVegan.R
create_directory.R		create_directory.R
filter_taxa_custom .R		filter_taxa_custom .R
plot_core_microbiome.R		plot_core_microbiome.R
print_sentence.R		print_sentence.R
run_all_functions.R		run_all_functions.R
summ_count_phyloseq.R		summ_count_phyloseq.R
summ_detailed_phyloseq.R		summ_detailed_phyloseq.R
summ_overall_phyloseq.R		summ_overall_phyloseq.R
summ_phyloseq_ASVID.R		summ_phyloseq_ASVID.R
summ_phyloseq_sampleID.R		summ_phyloseq_sampleID.R
summerize phyloseq.R		summerize phyloseq.R