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convert a gff file into fasta format
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minillinim/gff2fasta
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******************************************************************************* ******************************************************************************* ******************************************************************************* ******************************************************************************* .d888 .d888 .d8888b. .d888 888 d88P" d88P" d88P Y88b d88P" 888 888 888 888 888 888 .d88b. 888888 888888 .d88P 888888 8888b. .d8888b 888888 8888b. d88P"88b 888 888 .od888P" 888 "88b 88K 888 "88b 888 888 888 888 d88P" 888 .d888888 "Y8888b. 888 .d888888 Y88b 888 888 888 888" 888 888 888 X88 Y88b. 888 888 "Y88888 888 888 888888888 888 "Y888888 88888P' "Y888 "Y888888 888 Y8b d88P "Y88P" ******************************************************************************* ******************************************************************************* ******************************************************************************* ******************************************************************************* Convert a gff3 file into a set of fasta sequences ******************************************************************************* ******************************************************************************* ******************************************************************************* ******************************************************************************* A simple script. Can output protein or nucl sequences. Can also output all "non-ORF" regions and contigs containing no ORFs too. SEE: gff2fasta.pl -h for more info. ******************************************************************************* ******************************************************************************* ******************************************************************************* ******************************************************************************* Project home page Information on the source tree, documentation, issues and how to contribute, see http://github.com/minillinim/gff2fasta ******************************************************************************* ******************************************************************************* ******************************************************************************* ******************************************************************************* Cite This software is currently unpublished. ******************************************************************************* ******************************************************************************* ******************************************************************************* ******************************************************************************* Copyright © 2012 Michael Imelfort. See LICENSE.txt for further details. ******************************************************************************* ******************************************************************************* ******************************************************************************* *******************************************************************************
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