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Visualizing TranscriptClean results

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Dana Wyman edited this page Jul 9, 2018 · 1 revision

An R script is included with TranscriptClean to generate a PDF report summarizing the results from your run. To create the report with naming pattern /my/path/outprefix_report.pdf, run the following command:

Rscript generate_report.R /my/path/outprefix

The output includes:

  • Summary tables to indicate how many reads were processed and how many errors of each type were corrected
  • Histograms of indel size and distance of noncanonical splice junctions from annotated sites
  • Plots tracking how abundant different errors are in the data before and after TranscriptClean.
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