Transforms and meta data to map between different mouse template brains. This package is intended to be used with navis and is analogous to navis-flybrains
.
Currently mousebrains
ships with:
- meta data and surface meshes the Allen CCF mouse brain template
You can install mousebrains
from PyPI:
pip3 install mousebrains
To install the dev version from Github:
pip3 install git+https://github.com/navis-org/navis-mousebrains.git
In order to use CMTK-based transforms, you will need to have CMTK installed.
For the Elastix-based transforms, you will need to download
elastix and make sure that the path
to the binaries is in your PATH
variable.
TODO
TODO
TODO
TODO
When in doubt, feel free to open an issue to ask for advice.