NOVOPlasty4.3.5

• Resolved some small bugs and added new read id structures.

NOVOPlasty4.3.3

• UPDATED CONFIG FILE!
• Included a new feature "Reduce ambigious N's", which will avoid ambigious nucleotides by always choosing the majority during consensus calling.
• Fixed assembly metrics in batch mode
• Included "Output path" as variable option in batch mode

NOVOPlasty4.3.1

• Added an output directory option to the config file
• Added an store hash locally option to the config file to speed up the assembly when using the same dataset for multiple runs

NOVOPlasty4.2

Update README.md

NOVOPlasty4.0

• Improved assembly method
• Improved heteroplasmy detection.
• Heteroplasmy output now includes AF and DP for indels.

NOVOPlasty3.8.3

• UPDATED CONFIG FILE!
• Improved heteroplasmy calling
• Improved organelle assembly
• NEW FUNCTION: It is now possible to extend a seed directly, this will not correct the given seed, so it may not have mismatches

NOVOPlasty3.7.2

• Improved heteroplasmy detection.
• Problem with config file in Windows fixed.

NOVOPlasty3.7

• Improved heteroplasmy calling

NOVOPlasty3.6

• Improved heteroplasmy calling
• Batch assemblies won't interrupt anymore after a failed assembly
• Resolved several bugs

NOVOPlasty3.2

-Resolved several bugs