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@nipreps

NeuroImaging PREProcessing toolS

NiPreps (NeuroImaging PREProcessing toolS)

Please visit www.nipreps.org for a more comprehensive description of this community. Don't forget to also learn about the sister initiative www.templateflow.org.

News and some discussions take place at the Nipreps GitHub discussions.

About

The current neuroimaging workflow has matured into a large chain of processing and analysis steps involving a large number of experts, across imaging modalities and applications. The development and fast adoption of fMRIPrep have revealed that neuroscientists need tools that simplify their research workflow, provide visual reports and checkpoints, and engender trust in the tool itself. The NiPreps framework extends fMRIPrep's approach and principles to new imaging modalities. The vision for NiPreps is to provide end-users (i.e., researchers) with applications that allow them to perform quality control smoothly and to prepare their data for modeling and statistical analysis.

Acknowledgments

This work is steered and maintained by the NiPreps Community. The development of this framework is supported the NIMH (RF1MH121867, RAP, OE).

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  1. fmriprep fmriprep Public

    fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

    HTML 613 288

  2. dmriprep dmriprep Public

    dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

    Python 63 24

  3. smriprep smriprep Public

    Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)

    Python 126 38

  4. mriqc mriqc Public

    Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

    Python 285 128

Repositories

Showing 10 of 45 repositories
  • acres Public

    Data-loading utility for Python

    nipreps/acres’s past year of commit activity
    Python 0 Apache-2.0 0 3 1 Updated Jul 20, 2024
  • niworkflows Public

    Common workflows for MRI (anatomical, functional, diffusion, etc)

    nipreps/niworkflows’s past year of commit activity
    Python 85 Apache-2.0 52 56 (3 issues need help) 7 Updated Jul 19, 2024
  • smriprep Public

    Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)

    nipreps/smriprep’s past year of commit activity
    Python 126 Apache-2.0 38 57 6 Updated Jul 19, 2024
  • nibabies Public

    fMRIPrep-Infants - A robust, transparent workflow tailored for neonate and infant MRI

    nipreps/nibabies’s past year of commit activity
    Python 19 Apache-2.0 9 30 9 Updated Jul 18, 2024
  • fmriprep Public

    fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

    nipreps/fmriprep’s past year of commit activity
    HTML 613 Apache-2.0 288 277 (24 issues need help) 6 Updated Jul 18, 2024
  • nipreps.github.io Public

    The NiPreps landing page

    nipreps/nipreps.github.io’s past year of commit activity
    Python 2 CC0-1.0 8 8 2 Updated Jul 18, 2024
  • eddymotion Public

    Open-source eddy-current and head-motion correction for dMRI.

    nipreps/eddymotion’s past year of commit activity
    Python 12 Apache-2.0 16 31 (1 issue needs help) 5 Updated Jul 12, 2024
  • mriqc Public

    Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

    nipreps/mriqc’s past year of commit activity
    Python 285 Apache-2.0 128 74 (13 issues need help) 3 Updated Jul 11, 2024
  • sdcflows Public

    Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes

    nipreps/sdcflows’s past year of commit activity
    Python 30 Apache-2.0 24 30 2 Updated Jul 8, 2024
  • nipreps/nirodents’s past year of commit activity
    Python 12 Apache-2.0 3 8 0 Updated Jul 2, 2024

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