Adding Gamma AQ, HT, LT, and HW stress factors to biogenics #997
Workflow file for this run
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name: CI | |
on: | |
push: | |
branches: [main, develop] | |
pull_request: | |
workflow_dispatch: | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.ref }} | |
cancel-in-progress: true | |
jobs: | |
build: | |
name: Build and test | |
runs-on: ubuntu-22.04 | |
strategy: | |
matrix: | |
compiler: [gfortran-9, gfortran-10, gfortran-11] | |
defaults: | |
run: | |
shell: bash -l {0} | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Install dependencies | |
run: | | |
sudo apt-get update | |
sudo apt-get install libnetcdff-dev | |
- name: Set up Python (micromamba) | |
uses: mamba-org/setup-micromamba@v1 | |
with: | |
environment-file: python/environment.yml | |
cache-environment: true | |
create-args: | | |
python=3.10 | |
- name: Check that default input is nc | |
run: | | |
f90nml -g filenames -v file_vars="'input/gfs.t12z.20220701.sfcf000.canopy.nc'" \ | |
input/namelist.canopy input/namelist.canopy | |
f90nml -g userdefs -v ntime=1 \ | |
input/namelist.canopy input/namelist.canopy | |
python -c ' | |
import f90nml | |
with open("input/namelist.canopy") as f: | |
nml = f90nml.read(f) | |
assert nml["filenames"]["file_vars"].endswith((".nc", ".ncf")), "nc input by default, like build" | |
assert nml["userdefs"]["infmt_opt"] == 0, "necessary to read 2-D" | |
' | |
- name: Debug compile and run | |
run: | | |
make -C src clean | |
make -C src | |
./canopy | |
env: | |
DEBUG: 1 | |
FC: ${{ matrix.compiler }} | |
NF_CONFIG: /usr/bin/nf-config | |
- name: Run Python module as script | |
run: | | |
cd python | |
python canopy_app.py | |
cd - | |
- name: Run Python example nbs | |
run: | | |
cd python | |
for f in *.ipynb; do | |
jupyter nbconvert --to notebook --execute $f || exit 1 | |
done | |
cd - | |
- name: Non-debug compile and run | |
run: | | |
make -C src clean | |
make -C src | |
./canopy | |
env: | |
DEBUG: 0 | |
FC: ${{ matrix.compiler }} | |
NF_CONFIG: /usr/bin/nf-config | |
- name: Non-NetCDF compile and run | |
run: | | |
make -C src clean | |
make -C src | |
f90nml -g filenames -v file_vars="'input/gfs.t12z.20220701.sfcf000.canopy.txt'" \ | |
input/namelist.canopy input/namelist.canopy | |
f90nml -g userdefs -v infmt_opt=1 \ | |
input/namelist.canopy input/namelist.canopy | |
./canopy | |
env: | |
DEBUG: 0 | |
FC: ${{ matrix.compiler }} | |
NETCDF: 0 |