Releases: pdimens/PopGenSims.jl
Releases · pdimens/PopGenSims.jl
v0.3.2
PopGenSims v0.3.2
- Added new
sample
method to create simulated samples while keeping the original proportions of samples in each population.
v0.3.1
PopGenSims v0.3.1
v0.3.1
No changes, just linked with Zenodo
Full Changelog: v0.3.0...0.3.1
v0.3.0
PopGenSims v0.3.0
v0.2.0
PopGenSims v0.2.0
Breaking Change
simulate_sibship
syntax replaced keywordsn = Int
andrelationship = "fullsib"
with a keyword for each relationship type:fullsib::Int
halfsib::Int
unrelated::Int
parentoffspring::Int
So, the new function syntax looks like:
sims = simulate_sibship(popdata, fullsib = 50, halfsib = 20)
The result being that you can perform multiple simulations in one function call without having to merge the results manually!
v0.1.0
PopGenSims v0.1.0
Merged pull requests:
v0.0.4
PopGenSims v0.0.4
Breaking changes
- none
Nonbreaking Changes
Randoms.jl
is now a dependency- updated
TagBot.yml
for non-cron triggering
Bugfixes
- incorrect ploidy hardcoding in
simulate()
- docstring for
simulate_sample
- type inference for
allele_pool(::PopData)
- correctly import
allele_freq
fromPopGen.jl
- correctly import
Weights
fromStatsBase.jl
New Features
- unit testing via github-actions CI for all functions
- all instances of
rand()
andsample()
now useXorshifts.Xoroshiro128Star()
fromRandomNumbers
instead ofMersenneTwister()
fromBase
Merged pull requests:
v0.0.3
v0.0.2
PopGenSims v0.0.2
- add sibship crosses
- change cross() API
Merged pull requests:
- CompatHelper: add new compat entry for "DataFrames" at version "0.21" (#1) (@github-actions[bot])
- CompatHelper: add new compat entry for "InvertedIndices" at version "1.0" (#2) (@github-actions[bot])
- CompatHelper: add new compat entry for "PopGen" at version "0.0.3" (#3) (@github-actions[bot])
- CompatHelper: add new compat entry for "PooledArrays" at version "0.5" (#4) (@github-actions[bot])
- CompatHelper: add new compat entry for "StatsBase" at version "0.33" (#5) (@github-actions[bot])
- CompatHelper: add new compat entry for "StaticArrays" at version "0.12" (#6) (@github-actions[bot])
- fix metadata (#7) (@pdimens)