Queue and upload BEDbase projects #253
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name: Queue and upload BEDbase projects | |
on: | |
schedule: | |
# run every 2d day at 10:00 | |
- cron: '0 10 1/2 * *' | |
workflow_dispatch: | |
inputs: null | |
jobs: | |
build: | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
python-version: [ "3.10" ] | |
os: [ ubuntu-latest ] | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v2 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install package | |
run: python -m pip install . | |
- name: Add to the queue | |
run: geopephub run-queuer --target bedbase --period 2 | |
env: | |
POSTGRES_DB: ${{ secrets.POSTGRES_DB }} | |
POSTGRES_HOST: ${{ secrets.POSTGRES_HOST }} | |
POSTGRES_PASSWORD: ${{ secrets.POSTGRES_PASSWORD }} | |
POSTGRES_PORT: ${{ secrets.POSTGRES_PORT }} | |
POSTGRES_USER: ${{ secrets.POSTGRES_USER }} | |
- name: Add to the database | |
run: geopephub run-uploader --target bedbase | |
env: | |
POSTGRES_DB: ${{ secrets.POSTGRES_DB }} | |
POSTGRES_HOST: ${{ secrets.POSTGRES_HOST }} | |
POSTGRES_PASSWORD: ${{ secrets.POSTGRES_PASSWORD }} | |
POSTGRES_PORT: ${{ secrets.POSTGRES_PORT }} | |
POSTGRES_USER: ${{ secrets.POSTGRES_USER }} | |