Shiny interface for the analysis of spectrokinetic matrices:
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Singular Value Decomposition (SVD)
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Multi Curve Resolution by Alternated Least Squares (MCR-ALS)
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Hybrid hard-soft modeling (DAS, homogeneous chemistry...)
New: online here
For cross-plateform compatibility issues, the preferred installation method is through a docker container.
The skana Docker container has all elements preinstalled.
To run the container:
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Install Docker
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Type the following command in a terminal
docker run -d -p 3840:3840 --name skana ppernot1/skana
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Access SK-Ana at http://localhost:3840 in your favorite browser
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When finished
docker kill skana
- For further sessions
docker restart skana
- To cleanup
docker remove -v skana
- To get the latest version
docker pull ppernot1/skana
If you use SK-Ana in one of your publications, do not forget to cite it and include the version you used for reproducibility:
Pernot, P. (2018) SK-Ana: Analysis of Spectro-Kinetic Data (Version X.X).
https://doi.org/10.5281/zenodo.1064370
- C. Ruckebusch, M. Sliwa, P. Pernot, A. d. Juan, R. Tauler (2012) "Comprehensive data analysis of femtosecond transient absorption spectra: A review", J. Photochem. Photobiol. C 13:1–27. DOI
- Apport de la simulation à la détermination de mécanismes réactionnels en chimie sous rayonnement. Action Nationale de Formation CNRS "Chimie sous Rayonnement et Radiochimie" (Oléron, 2017/09) PDF
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D.H. Cruz Neto, J. Soto, N. Maity, Ch. Lefumeux, T. Nguyen, P. Pernot, K. Steenkeste, D. Peláez, M.-H. Ha-Thi and Th. Pino (2023) J. Phys. Chem. Letters 14:4789–4795. (https://doi.org/10.1021/acs.jpclett.3c00594)
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M. Knezevic, V.-D. Quach, I. Lampre, M. Erard, P. Pernot, D. Berardan, Ch. Colbeau-Justin and M.N. Ghazzal (2023) J. Mater. Chem. A 11:6226-6236. (https://doi.org/10.1039/D2TA09920A)
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K. Iwamatsu, R. Gakhar, Ph. Halstenberg, B. Layne, S.M. Pimblott and J.F. Wishart (2022) Phys. Chem. Chem. Phys. 24:25088-25098. (https://doi.org/10.1039/D2CP01194H)
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C. Shang and P.E. Reiller (2021) Dalton Trans. 50:17165-17180. (https://doi.org/10.1039/D1DT03204F)
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M. Puget, V. Shcherbakov, S. Denisov, P. Moreau, J.-P. Dognon, M. Mostafavi and S. Le Caër (2021) Chem. Eur. J. 27:8185. (https://doi.org/10.1002/chem.202100562)
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R. Kaczmarek, S. Ward, D. Debnath, T. Jacobs, A. D. Stark, D. Korczyński, A. Kumar, M. D. Sevilla, S. A. Denisov, V. Shcherbakov, P. Pernot, M. Mostafavi, R. Dembinski and A. Adhikary (2020) Chemistry – A European Journal 26:9495–9505. (http://dx.doi.org/10.1002/chem.202000247)
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S. Al Gharib, J.-L. Marignier, A.K. El Omar, A. Naja, S. Le Caer, M. Mostafavi and J. Belloni (2019) J. Phys. Chem. C 123:22624-22633. (http://dx.doi.org/10.1021/acs.jpcc.9b06090)
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F. Wang, P. Pernot, J.-L. Marignier, P. Archirel and M. Mostafavi (2019) J. Phys. Chem. B _123, 2019, pp. __:6599-6608. (http://dx.doi.org/10.1021/acs.jpcb.9b05560)
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F. Wang, G.P. Horne, P. Pernot, P. Archirel and M. Mostafavi (2018) J. Phys. Chem. B _122, 2018, pp. __:7134-7142. (http://dx.doi.org/10.1021/acs.jpcb.8b03715)
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J. Ma, A. Kumar, Y. Muroya, S. Yamashita, T. Sakurai, S.A. Denisov, M.D. Sevilla, A. Adhikary, S. Seki and M. Mostafavi (2019) Nat. Commun. 10:102. (https://doi.org/10.1038/s41467-018-08005-z)
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J. Ma, S. A. Denisov, J. Marignier, P. Pernot, A. Adhikary, S. Seki and M. Mostafavi (2018) J. Phys. Chem. Lett. 9:5105-5109. (http://dx.doi.org/10.1021/acs.jpclett.8b02170)
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J. Ma, J. Marignier, P. Pernot, C. Houée-Levin, A. Kumar, M. D. Sevilla, A. Adhikary and M. Mostafavi (2018) Phys. Chem. Chem. Phys. 20:14927-14937. (http://dx.doi.org/10.1039/C8CP00352A)
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J. Ma, P. Archirel, P. Pernot, U. Schmidhammer, S. L. Caër and M. Mostafavi (2016) J. Phys. Chem. B 120:773–784. (http://dx.doi.org/10.1021/acs.jpcb.5b11315)
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J. Ma, P. Archirel, U. Schmidhammer, J. Teuler, P. Pernot and M. Mostafavi (2013) J. Phys. Chem. A 117:14048–14055. (http://dx.doi.org/10.1021/jp410598y)