Test routine: add Makefile; CI: consolidate ci.yaml files #7

	name: CI

	on:
	push:
	branches:
	- main
	pull_request:
	branches:
	- main
	schedule:
	- cron: "0 5 * * TUE"

	env:
	CACHE_NUMBER: 2 # Change this value to manually reset the environment cache

	jobs:
	build:
	strategy:
	fail-fast: false
	max-parallel: 3
	matrix:
	os:
	- ubuntu-latest
	- macos-latest
	- windows-latest

	runs-on: ${{ matrix.os }}

	defaults:
	run:
	shell: bash -l {0}

	steps:
	- uses: actions/checkout@v2


	- name: Setup micromamba
	uses: mamba-org/setup-micromamba@v1
	with:
	micromamba-version: latest
	environment-file: envs/environment.yaml
	log-level: debug
	init-shell: bash
	cache-environment: true
	cache-downloads: true

	- name: Set cache dates
	run: \|
	echo "WEEK=$(date +'%Y%U')" >> $GITHUB_ENV

	- name: Cache data and cutouts folders
	uses: actions/cache@v3
	with:
	path: \|
	data
	cutouts
	key: data-cutouts-${{ env.WEEK }}-${{ env.CACHE_NUMBER }}


	- name: Conda list
	run: conda list

	- name: Run Test
	run: make test

	# - name: Test plotting and summaries
	# run: \|
	# snakemake --cores all plot_all_p_nom
	# snakemake --cores all plot_all_summaries
	# snakemake --cores all make_all_summaries
	# rm -rf resources/.nc resources/.geojson resources/*.h5 networks results

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